PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1140s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 188aa    MW: 19635.2 Da    PI: 6.2575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1140s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-193888155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr++  +g+WvAeIr+p   + r +r +lg+f t eeAa a++ a+ kl+g
  Kalax.1140s0001.1.p 38 CIYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSEEAATAYDSAAIKLYG 88
                         56*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-143888IPR001471AP2/ERF domain
CDDcd000184.29E-283894No hitNo description
PROSITE profilePS5103222.0493996IPR001471AP2/ERF domain
SMARTSM003801.3E-3439102IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-213995IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-304095IPR001471AP2/ERF domain
PRINTSPR003679.2E-114051IPR001471AP2/ERF domain
PRINTSPR003679.2E-116278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNVDDDNPPT PAAAAKPQTG RSRKGCARGK GGPENASCIY RGVRQRTWGK WVAEIREPNR  60
GARLWLGTFN TSEEAATAYD SAAIKLYGSA AKLNLLTLHQ HEHQNNTNAA TTTTTVGTAS  120
SSSGSNSNSD SISSGNYNNG GFGFGETTTS IGGFLGGGGG GGEESGGEFL YVNEFKDWDG  180
MQVPWSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-184095662ATERF1
3gcc_A3e-184095662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389032.11e-44PREDICTED: dehydration-responsive element-binding protein 2D
SwissprotP618271e-42DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A078GG203e-42A0A078GG20_BRANA; BnaC09g39350D protein
TrEMBLA0A0D3EED93e-42A0A0D3EED9_BRAOL; Uncharacterized protein
TrEMBLV4TXQ73e-43V4TXQ7_9R
STRINGBra023674.1-P3e-41(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.15e-41ERF family protein